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Thiamin and its phosphate derivatives are ubiquitous molecules involved as essential cofactors in many cellular processes. The de novo biosynthesis of thiamin employs the parallel synthesis of 4-methyl-5-(2-hydroxyethyl)thiazole (THZ-P) and 4-amino-2-methyl-5(diphosphooxymethyl) pyrimidine (HMP) pyrophosphate (HMP-PP), which are coupled to generate thiamin phosphate. Most organisms that can biosynthesize thiamin employ a kinase (HMPK or ThiD) to generate HMP-PP. In nearly all cases, this enzyme is bifunctional and can also salvage free HMP, producing HMP-P, the monophosphate precursor of HMP-PP. Here we present high-resolution crystal structures of an HMPK from Acinetobacter baumannii (AbHMPK), both unliganded and with pyridoxal 5-phosphate (PLP) noncovalently bound. Despite the similarity between HMPK and pyridoxal kinase enzymes, our kinetics analysis indicates that AbHMPK accepts HMP exclusively as a substrate and cannot turn over pyridoxal, pyridoxamine, or pyridoxine nor does it display phosphatase activity. PLP does, however, act as a weak inhibitor of AbHMPK with an IC50 of 768 μM. Surprisingly, unlike other HMPKs, AbHMPK catalyzes only the phosphorylation of HMP and does not generate the diphosphate HMP-PP. This suggests that an additional kinase is present in A. baumannii, or an alternative mechanism is in operation to complete the biosynthesis of thiamin. 

Vertebrate herbivore excrement is thought to influence nutrient cycling, plant nutrition, and growth; however, its importance is rarely isolated from other aspects of herbivory, such as trampling and leaf removal, leaving questions about the extent to which herbivore effects are due to feces. We hypothesized that as a source of additional nutrients, feces would directly increase soil N concentrations and N2O emission, alleviate plant, and microbial nutrient limitations, resulting in increased plant growth and foliar quality, and increase CH4 emissions. We tested these hypotheses using a field experiment in coastal western Alaska,USA, where we manipulated goose feces such that naturally grazed areas received three treatments:feces removal, ambient amounts of feces, or double ambient amounts of feces. Doubling feces marginally increased NH4 +-N in soil water, whereas both doubled feces and feces removal significantly increased NO3--N; N2O flux was also higher in removal plots. Feces removal marginally reduced root biomass and significantly reduced productivity (that is, GPP) in the second year, measured as greater CO2 emissions. Doubling feces marginally increased foliar chemical quality by increasing %N and decreasing C:N. Treatments did not influence CH4 flux. In short, feces removal created sites poorer in nutrients, with reduced root growth, graminoid nutrient uptake, and productivity. While goose feces alone did not create dramatic changes in nutrient cycling in western Alaska, they do appear to be an important source of nutrients for grazed areas and to contribute to greenhouse gas exchange as their removal increased emissions of CO2 and N2O to the atmosphere. 

Widespread development and shifts from rural to urban areas within the Wildland-Urban Interface (WUI) has increased fire risks to local populations, as well as introduced complex and long-term costs and benefits to communities. We use an interdisciplinary approach to investigate how trends in fire characteristics influence adaptive management and economies in the Intermountain Western US (IMW). Specifically, we analyze area burned and fire frequency in the IMW over time, how fires in urban or rural settings influence local economies and whether fire trends and economic impacts influence managers’ perspectives and adaptive decision-making. Our analyses showed some increasing fire trends at multiple levels. Using a non-parametric event study model, we evaluated the effects of fire events in rural and urban areas on county-level private industry employment, finding short- and long-term positive effects of fire on employment at several scales and some short-term negative effects for specific sectors. Through interviewing 20 fire managers, we found that most recognize increasing fire trends and that there are both positive and negative economic effects of fire. We also established that many of the participants are implementing adaptive fire management strategies and we identified key challenges to mitigating increasing fire risk in the IMW. 

To predict future changes in high latitude biomes, it is important to understand how plant communities will respond to increased temperature. Across sub-arctic systems, warming generally increases aboveground biomass in plant communities. Specifically, in arctic graminoid systems, experimental warming has been shown to increase productivity, aboveground biomass and leaf litter production, and stimulate early-season growth. Warming can also decrease species richness, and reduce foliar nitrogen (N) in aboveground biomass over the growing season. Migrating geese are important grazers in arctic and subarctic ecosystems during summer breeding months. Avian herbivores depend on high quality forage (high N) and are often found at high enough densities to impact vegetation communities. Exclosure experiments show that goose herbivory reduces biomass of herbaceous species but increases net above-ground primary production and N concentrations of grazing-tolerant sedges, and sometimes even increases species richness. Goose herbivory also alters plant physiological processes as evidenced by increased N uptake by plants, as well as the biophysical processes that affect N cycling through trampling and fecal deposition. Thus, high-density populations of avian herbivores can have top-down control on their vegetation communities. While increasing global temperatures may increase aboveground biomass and decrease species richness in plant communities, herbivory could potentially mediate, or even reverse, these responses. For example, Post and Pedersen (2008) suggest that herbivory may exacerbate plant response to warming because both effects increase rates of productivity, while simultaneously reducing the effects of warming on aboveground biomass. If the interaction between warming and herbivory causes a shift in plant abundance and community functional groups, this could cascade through the system resulting in changes in nutrient cycling and plant-animal feedbacks. The Yukon-Kuskokwim (Y-K) Delta is one of the largest river deltas in the world and is a globally important breeding area for millions of long-distance migratory waterfowl and shorebird species. The majority of these species nest in high densities close to the ocean among lowland coastal habitat. Geese populations utilize overlapping habitats and shift from more coastal to more interior habitats over the growing season. The expectations for how vegetation responds to increasing temperature and changes in herbivory with climate change will vary for different plant communities. We propose to conduct an experiment that investigates the impact of warming and herbivory on three coastal sub-arctic vegetation communities in the Y-K Delta addressing the following questions: 1) How does warming impact vegetation biomass and community composition; 2) How does herbivory impact species composition and plant functional groups; and 3) How do the different responses to warming and herbivory interact? 

Abstract Rapid warming in northern ecosystems over the past four decades has resulted in earlier spring, increased precipitation, and altered timing of plant–animal interactions, such as herbivory. Advanced spring phenology can lead to longer growing seasons and increased carbon (C) uptake. Greater precipitation coincides with greater cloud cover possibly suppressing photosynthesis. Timing of herbivory relative to spring phenology influences plant biomass. None of these changes are mutually exclusive and their interactions could lead to unexpected consequences for Arctic ecosystem function. We examined the influence of advanced spring phenology, cloud cover, and timing of grazing on C exchange in the Yukon–Kuskokwim Delta of western Alaska for three years. We combined advancement of the growing season using passive-warming open-top chambers (OTC) with controlled timing of goose grazing (early, typical, and late season) and removal of grazing. We also monitored natural variation in incident sunlight to examine the C exchange consequences of these interacting forcings. We monitored net ecosystem exchange of C (NEE) hourly using an autochamber system. Data were used to construct daily light curves for each experimental plot and sunlight data coupled with a clear-sky model was used to quantify daily and seasonal NEE over a range of incident sunlight conditions. Cloudy days resulted in the largest suppression of NEE, reducing C uptake by approximately 2 g C m⁻²d⁻¹regardless of the timing of the season or timing of grazing. Delaying grazing enhanced C uptake by approximately 3 g C m⁻²d⁻¹. Advancing spring phenology reduced C uptake by approximately 1.5 g C m⁻²d⁻¹, but only when plots were directly warmed by the OTCs; spring advancement did not have a long-term influence on NEE. Consequently, the two strongest drivers of NEE, cloud cover and grazing, can have opposing effects and thus future growing season NEE will depend on the magnitude of change in timing of grazing and incident sunlight.